There are many well-known museums in Tokyo, like TeamLab, Mori Art Museum, and the Ghibli Museum. However, if you’ve already visited these or are searching for something different, here are some underrated museums in Tokyo that I absolutely love and highly recommend. These hidden gems cover a range of interests, including nature, art, and history. Most of these underrated museums in Tokyo are centrally located, while a few are a bit outside the city—perfect for a day trip or a weekend escape.
5 Underrated Museums in Tokyo
1. Small Worlds
Small Worlds is likely my favourite on this list. It’s the world’s largest indoor miniature theme park, covering 8,000 square metres of intricate dioramas and small-scale exhibitions. There are six different areas to explore, each evoking a sense of childlike wonder. As you admire the detailed settings, it’s easy to imagine yourself living in these miniaturised worlds. The variety of sceneries and hidden details makes Small Worlds a visual treat with unique photo opportunities.
Despite not being a massive museum, I spent four hours here. My personal favourite was the Kansai International Airport area, where you can see miniature planes taking off and passengers in the terminals. This underrated museum in Tokyo truly showcases an incredible attention to detail, and I’m sure you’ll love it just as much as I did.
2. Japan Olympic Museum
Tokyo has hosted the Olympics twice—first in 1964 and most recently in 2021. If you didn’t get a chance to experience the Games, the Japan Olympic Museum is the next best thing. Located in the Shinjuku area, opposite the New Olympic Arena, this museum explores the Olympic Games through art, with pieces created by artists, children, and athletes.
There are also interactive exhibits where you can test your physical abilities against those of Olympic athletes. For sports fans, this underrated museum in Tokyo is a fantastic way to experience the Olympics up close.
3. The Railway Museum
If you’re even slightly interested in trains, you should definitely visit the Railway Museum in Saitama. Operated by the East Japan Railway Culture Foundation, this museum delves into the history and technology of railways in Japan and across the globe.
Featuring 30 railway cars, train cab simulators, dioramas, and interactive exhibits, it’s a perfect spot for train enthusiasts. You can even board some of the full-size trains on display. This underrated museum near Tokyo offers a hands-on, fun experience for visitors of all ages.
4. National Museum of Nature and Science
Located in Ueno Park, the National Museum of Nature and Science is one of the oldest museums in Japan, founded in the Meiji era. Its permanent and special exhibitions cover a wide range of topics, from Japan’s natural history to space exploration.
One highlight is the dinosaur exhibition, featuring fossils and models that are sure to impress dinosaur lovers. Another standout is the Earth History Navigator room, with its engaging animations on Japan’s geological past. For anyone interested in science, this underrated museum in Tokyo is a must-see.
5. Meguro Parasitological Museum
The thought of parasites might be off-putting, but the Meguro Parasitological Museum is far from disgusting. In fact, it’s incredibly interesting and is the only museum in the world dedicated to parasites. Located in Meguro, Tokyo, the museum is free to enter and offers fascinating displays on parasites from around the globe.
The second floor focuses on parasites that affect humans, detailing their life cycles, symptoms, and research history. While this underrated museum in Tokyo is small, it provides a unique experience unlike any other museum.
Bonus: Underrated Museums Near Tokyo!
6. Hakone Open-Air Museum
The Hakone Open-Air Museum is one of the most beautiful museums you’ll ever visit. It was Japan’s first outdoor museum and is spread over 70,000 square metres, showcasing 120 outdoor sculptures.
One highlight is the stunning Symphony Sculpture, a cylindrical building of stained glass with a spiral staircase at its centre. There’s also a Picasso Exhibition Hall with an extensive collection of his works. After exploring, you can relax in the museum’s hot spring footbath while taking in the breathtaking scenery of this underrated gem.
7. Kawaguchiko Music Forest
The Kawaguchiko Music Forest is a unique museum dedicated to music boxes and other mechanical instruments. Located in Kawaguchiko, with a view of Mt Fuji on clear days, this musical theme park features a world-class collection of instruments, including the largest dance organ and a Philharmonic Performance Orchestrion designed for the Titanic.
Visitors can enjoy live performances by musicians and even a special sand art show. The Rose Garden is another highlight, with 720 varieties of flowers in bloom throughout the year. This underrated museum near Tokyo is an enchanting spot for music lovers.
Spend a Day at Tokyo’s Hidden Museum Gems
Tokyo is full of surprises, and its underrated museums offer a fascinating glimpse into the city’s diverse culture, history, and artistry. Whether you’re drawn to miniature worlds, Olympic history, or outdoor sculptures, these hidden gems provide unique experiences for every type of visitor. Exploring beyond the well-known spots will give you a deeper appreciation for Tokyo’s lesser-known wonders.
So, next time you’re in the city, make sure to step off the beaten path and visit some of these remarkable museums—you might just discover your new favourite place.
Even if you have heard of or been to some of these museums, many of these places offer seasonal events or special exhibitions. Check out the official websites of these museums to find out what they have going on. Which of these museums do you like or want to visit? Let us know!
